feat(questionnaire): integrate revised intake and follow-up monitoring
CI / ruff · pytest (pull_request) Successful in 55s

Add gated TSQ, Russian C-SSRS Recent, durable responses and notifications, diaries, schedules and audited clinical review. Preserve manual assessment when the Russian follow-up source is unavailable.

Refs #52
This commit is contained in:
Pavel Eliseev
2026-10-03 18:19:34 +03:00
parent 8b61eecf1b
commit c42ef621e5
34 changed files with 2556 additions and 85 deletions
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"""Versioned release gate and deterministic follow-up planning."""
from calendar import monthrange
from datetime import date, timedelta
from pathlib import Path
from typing import Literal
from zoneinfo import ZoneInfo
import yaml
from pydantic import BaseModel, ConfigDict, Field, model_validator
from app.config import get_settings
from app.core.questionnaire import Approval, load_policy
class RuntimePolicy(BaseModel):
model_config = ConfigDict(extra="forbid", frozen=True)
version: str
enabled: bool = False
approval: Approval | None = None
content_review: Approval | None = None
contact_review: Approval | None = None
timezone: str
daily_hour: int = Field(ge=0, le=23)
mood_baseline_days: int = Field(ge=2)
mood_bad_days: int = Field(ge=1)
mood_drop: int = Field(ge=1, le=10)
sleep_bad_days: int = Field(ge=1)
sleep_hours_below: float = Field(gt=0, le=24)
nightmares_at: int = Field(ge=0, le=4)
missed_medication_days: int = Field(ge=1)
high_risk_silence_days: int = Field(ge=1)
medication_days: tuple[int, ...]
medication_repeat_days: int = Field(ge=1)
route_intervals: dict[str, dict[str, int]]
alcohol_repeat_days: int = Field(ge=1)
phq9_retriage_delta: int = Field(ge=1)
pcl5_retriage_delta: int = Field(ge=1)
@model_validator(mode="after")
def valid(self):
ZoneInfo(self.timezone)
if set(self.route_intervals) != {"after_crisis", "specialist", "self_help"} or any(
set(row) != {"phq9", "pcl5"} for row in self.route_intervals.values()
):
raise ValueError("all route and scale intervals must be defined")
if not self.medication_days or tuple(sorted(set(self.medication_days))) != self.medication_days:
raise ValueError("medication days must be nonempty and strictly increasing")
if self.medication_days[0] < 1 or any(v < 1 for row in self.route_intervals.values() for v in row.values()):
raise ValueError("intervals must be positive")
if any(
a and a.policy_version != self.version for a in (self.approval, self.content_review, self.contact_review)
):
raise ValueError("review must match the runtime version")
return self
@property
def released(self) -> bool:
return self.enabled and all((self.approval, self.content_review, self.contact_review))
def load_runtime(path: Path | None = None) -> RuntimePolicy:
path = path or get_settings().config_dir / "intake_runtime.yaml"
return RuntimePolicy.model_validate(yaml.safe_load(path.read_text()))
def intake_enabled() -> bool:
return load_runtime().released and load_policy().approval is not None
def month_before(day: date, months: int = 1) -> date:
year, month = divmod(day.year * 12 + day.month - 1 - months, 12)
return day.replace(year=year, month=month + 1, day=min(day.day, monthrange(year, month + 1)[1]))
def due_scales(
*,
today: date,
enrolled: date,
last: dict[str, date],
route: Literal["specialist", "self_help"],
medication_changed: date | None = None,
after_crisis: date | None = None,
policy: RuntimePolicy | None = None,
) -> tuple[str, ...]:
"""Return each overdue form once. Therapy day zero is the recorded start/change date.
Due dates stay due until completion. Overlapping schedules choose the earlier
date; missed ticks do not create a burst of historical questionnaires.
"""
p = policy or load_runtime()
due = set()
for scale in ("phq9", "pcl5"):
completed = last.get(scale)
dates = [(completed or enrolled) + timedelta(days=p.route_intervals[route][scale])]
if after_crisis and after_crisis <= today:
dates.append(
max(completed or after_crisis, after_crisis) + timedelta(days=p.route_intervals["after_crisis"][scale])
)
if medication_changed and medication_changed <= today:
for offset in p.medication_days:
milestone = medication_changed + timedelta(days=offset)
if completed is None or completed < milestone:
dates.append(milestone)
break
else:
dates.append(
max(completed or medication_changed, medication_changed + timedelta(days=p.medication_days[-1]))
+ timedelta(days=p.medication_repeat_days)
)
if min(dates) <= today:
due.add(scale)
if (last.get("rus_audit_s") or enrolled) + timedelta(days=p.alcohol_repeat_days) <= today:
due.add("rus_audit_s")
return tuple(sorted(due))
def diary_flags(history: dict[date, dict], today: date, policy: RuntimePolicy | None = None) -> tuple[str, ...]:
"""Consecutive calendar dates; missing data never become zero or missed doses.
Baseline is the seven dates BEFORE the three-day deterioration window;
every baseline value is required. Nightmares OR short sleep must hold on
each of three nights. These candidate definitions require signed review.
"""
p = policy or load_runtime()
flags = []
current = history.get(today, {})
if current.get("death_thoughts") == 1:
flags.append("suicide_assessment_now")
recent = [history.get(today - timedelta(days=i), {}) for i in range(p.mood_bad_days)]
baseline = [
history.get(today - timedelta(days=i), {}).get("mood")
for i in range(p.mood_bad_days, p.mood_bad_days + p.mood_baseline_days)
]
if all(x is not None for x in baseline) and all(x.get("mood") is not None for x in recent):
mean = sum(baseline) / len(baseline)
if all(mean - x["mood"] >= p.mood_drop for x in recent):
flags.append("phq9_due_mood")
nights = [history.get(today - timedelta(days=i), {}) for i in range(p.sleep_bad_days)]
if all(
(r.get("nightmares") is not None and r["nightmares"] >= p.nightmares_at)
or (r.get("sleep_hours") is not None and r["sleep_hours"] < p.sleep_hours_below)
for r in nights
):
flags.append("sleep_review")
doses = [history.get(today - timedelta(days=i), {}) for i in range(p.missed_medication_days)]
if all(r.get("medication") == "none" for r in doses):
flags.append("medication_contact")
if current.get("side_effects") == 1:
flags.append("side_effects_review")
if current.get("medication") == "partial":
flags.append("partial_medication_review")
return tuple(flags)